| Season | Division | Pos. | P | W | D | L | F | A | Gdf | Pts |
| 2018/19 | Liga MX (clausura 2019) | 17 (18) | 17 | 3 | 2 | 12 | 11 | 30 | -19 | 11 |
| 2018/19 | Liga MX (apertura 2018) | 2 (18) | 17 | 7 | 5 | 5 | 19 | 20 | -1 | 26 |
| 2017/18 | Liga MX (clausura 2018) | 14 (18) | 17 | 4 | 6 | 7 | 13 | 18 | -5 | 18 |
| 2017/18 | Liga MX (apertura 2017) | 6 (18) | 17 | 3 | 7 | 7 | 19 | 27 | -8 | 16 |
| 2016/17 | Liga MX (clausura 2017) | 15 (18) | 17 | 5 | 4 | 8 | 21 | 27 | -6 | 19 |
| 2016/17 | Liga MX (apertura 2016) | 13 (18) | 17 | 5 | 5 | 7 | 20 | 24 | -4 | 20 |
| 2015/16 | Liga MX (clausura 2016) | 13 (18) | 17 | 5 | 4 | 8 | 21 | 26 | -5 | 19 |
| 2015/16 | Liga MX (apertura 2015) | 6 (18) | 17 | 6 | 4 | 7 | 25 | 25 | +0 | 22 |
| 2014/15 | Liga MX (clausura 2015) | 6 (18) | 17 | 8 | 2 | 7 | 25 | 23 | +2 | 26 |
| 2014/15 | Liga MX (apertura 2014) | 1 (18) | 17 | 6 | 3 | 8 | 23 | 22 | +1 | 21 |
| 2013/14 | Liga MX (clausura 2014) | 13 (18) | 17 | 6 | 3 | 8 | 18 | 22 | -4 | 21 |
| 2013/14 | Liga MX (apertura 2013) | 1 (18) | 17 | 7 | 5 | 5 | 20 | 19 | +1 | 26 |
| 2012/13 | Liga MX (clausura 2013) | 8 (18) | 17 | 6 | 6 | 5 | 18 | 20 | -2 | 24 |
| 2012/13 | Liga MX (apertura 2012) | 5 (18) | 17 | 1 | 4 | 12 | 11 | 30 | -19 | 7 |
| 2011/12 | Primera División (clausura 2012) | 17 (18) | 17 | 2 | 6 | 9 | 14 | 30 | -16 | 12 |
| 2011/12 | Primera División (apertura 2011) | 14 (18) | 17 | 8 | 2 | 7 | 24 | 21 | +3 | 26 |
| 2010/11 | Primera División (clausura 2011) | 16 (18) | 17 | 4 | 4 | 9 | 16 | 35 | -19 | 16 |
| 2010/11 | Primera División (apertura 2010) | 14 (18) | 17 | 5 | 4 | 8 | 18 | 28 | -10 | 19 |
| 2009/10 | Primera División (clausura 2010) | 11 (18) | 17 | 6 | 3 | 8 | 13 | 25 | -12 | 21 |
| 2009/10 | Primera División (apertura 2009) | 17 (18) | 17 | 5 | 3 | 9 | 17 | 29 | -12 | 18 |
Querétaro Fútbol Club
