| Season | Division | Pos. | P | W | D | L | F | A | Gdf | Pts |
| 2025 | Liga 1 (clausura) | 7 (19) | 17 | 6 | 7 | 4 | 24 | 17 | +7 | 25 |
| 2025 | Liga 1 (apertura) | 3 (19) | 18 | 8 | 7 | 3 | 28 | 20 | +8 | 31 |
| 2024 | Liga 1 (clausura) | 4 (18) | 17 | 9 | 5 | 3 | 30 | 16 | +14 | 32 |
| 2024 | Liga 1 (apertura) | 1 (18) | 17 | 12 | 2 | 3 | 36 | 19 | +17 | 38 |
| 2023 | Liga 1 (clausura) | 2 (19) | 18 | 11 | 5 | 2 | 31 | 13 | +18 | 38 |
| 2023 | Liga 1 (apertura) | 8 (19) | 18 | 6 | 7 | 5 | 24 | 22 | +2 | 25 |
| 2022 | Liga 1 (clausura) | 5 (19) | 18 | 10 | 3 | 5 | 31 | 18 | +13 | 33 |
| 2022 | Liga 1 (apertura) | 7 (19) | 18 | 13 | 2 | 3 | 23 | 11 | +12 | 41 |
| 2021 | Liga 1 (clausura) | 4 (19) | 17 | 9 | 4 | 4 | 34 | 15 | +19 | 31 |
| 2021 | Liga 1 (apertura) | 8 (18) | 9 | 2 | 3 | 4 | 11 | 12 | -1 | 9 |
| 2020 | Liga 1 (clausura) | 9 (20) | 9 | 4 | 1 | 4 | 18 | 14 | +4 | 13 |
| 2020 | Liga 1 (apertura) | 1 (20) | 19 | 7 | 6 | 6 | 22 | 20 | +2 | 27 |
| 2019 | Liga 1 (clausura) | 8 (18) | 15 | 6 | 3 | 6 | 26 | 21 | +5 | 21 |
| 2019 | Liga 1 (apertura) | 11 (18) | 19 | 7 | 5 | 7 | 29 | 26 | +3 | 26 |
| 2018 | Primera División (clausura) | 1 (16) | 15 | 9 | 3 | 3 | 21 | 13 | +8 | 30 |
| 2018 | Primera División (apertura) | 14 (16) | 15 | 6 | 6 | 3 | 23 | 20 | +3 | 24 |
| 2017 | Primera División (clausura) | 3 (16) | 15 | 9 | 4 | 2 | 30 | 12 | +18 | 31 |
| 2017 | Primera División (apertura) | 11 (16) | 15 | 5 | 4 | 6 | 19 | 18 | +1 | 19 |
| 2016 | Primera División (clausura) | 2 (16) | 44 | 21 | 11 | 12 | 68 | 48 | +20 | 74 |
| 2016 | Primera División (apertura) | 4 (16) | 15 | 7 | 3 | 5 | 24 | 18 | +6 | 24 |
Fútbol Club Melgar
