| ROUND | C | Q1 | Q2 | Q3 | R1 | R2 | QF | SF | F | |||||||||||
| l1 | l2 | l1 | l2 | l1 | l2 | r1 | r2 | r3 | r4 | r5 | r6 | l1 | l2 | l1 | l2 | l1 | l2 | |||
| Season archive |
| Tuesday, 25 July 2006 | |||||
| q2l1 |  Ekranas | 1-4 | Dinamo Zagreb | ||
| 14 | Lukšys | 7 | Eduardo | ||
| 32 | Buljat | ||||
| 51 | Eduardo | ||||
| 69 | Vugrinec | ||||
| Wednesday, 26 July 2006 | |||||
| q2l1 |  Fenerbahçe | 4-0 | B36 | ||
| 26 | Appiah | ||||
| 39 | Tümer | ||||
| 54 | Tuncay | ||||
| 90 | Önder | ||||
| q2l1 |  Hearts | 3-0 | Široki Brijeg | ||
| 53(og) | |||||
| 79 | Tall | ||||
| 85 | Bednár | ||||
| q2l1 |  FC København | 2-0 | MyPa | ||
| 64(p) | Bergdølmo | ||||
| 90 | Gravgaard | ||||
| q2l1 |  Levski | 2-0 | Sioni | ||
| 20 | Angelov | ||||
| 82(p) | Borimirov | ||||
| q2l1 |  Cork City | 0-1 | Crvena Zvezda | ||
| 37(og) | Behan | ||||
| q2l1 |  Debrecen | 1-1 | Rabotnički | ||
| 47 | Zsolnai | 45 | |||
| q2l1 |  FC Zürich | 2-1 | FC Salzburg | ||
| 2 | Keita | 32 | Vonlanthen | ||
| 20 | César | ||||
| q2l1 |  Djurgården | 1-0 | Ružomberok | ||
| 70 | Enrico | ||||
| q2l1 |  FH | 0-1 | Legia Warszawa | ||
| 83 | Élton | ||||
| q2l1 |  Gorica | 0-2 | FCSB | ||
| 54 | Dica | ||||
| 65 | Iacob | ||||
| q2l1 |  FK Liepāja | 1-4 | Dynamo | ||
| 87 | Kalonas | 20 | Diogo Rincón | ||
| 29 | Shatskikh | ||||
| 32 | Verpakovskis | ||||
| 82 | Gavrancic | ||||
| q2l1 |  Sheriff | 1-1 | Spartak | ||
| 90 | 77 | Kovác | |||
| q2l1 |  Mladá Boleslav | 3-1 | Vålerenga | ||
| 7 | Pecka | 67 | Gashi | ||
| 10 | Palát | ||||
| 18 | Matějovský | ||||
