| ROUND | C | Q1 | Q2 | Q3 | R1 | R2 | QF | SF | F | |||||||||||
| l1 | l2 | l1 | l2 | l1 | l2 | r1 | r2 | r3 | r4 | r5 | r6 | l1 | l2 | l1 | l2 | l1 | l2 | |||
| Season archive |
| Tuesday, 8 August 2006 | ||||||
| q3l1 |  FK Austria | 1-1 | Benfica | |||
| q3l1 |  Dinamo Zagreb | 0-3 | Arsenal | |||
| Wednesday, 9 August 2006 | ||||||
| q3l1 | Liverpool | 2-1 | Maccabi Haifa | |||
| q3l1 |  Standard | 2-2 | FCSB | |||
| q3l1 |  Hamburger SV | 0-0 | Osasuna | |||
| q3l1 |  Lille | 3-0 | Rabotnički | |||
| q3l1 |  Hearts | 1-2 | AEK | |||
| q3l1 |  Milan | 1-0 | Crvena Zvezda | |||
| q3l1 |  Galatasaray | 5-2 | Mladá Boleslav | |||
| q3l1 | FC Salzburg | 1-0 | Valencia | |||
| q3l1 |  FC København | 1-2 | Ajax | |||
| q3l1 |  Levski | 2-0 | Chievo | |||
| q3l1 |  Dynamo | 3-1 | Fenerbahçe | |||
| q3l1 |  CSKA | 3-0 | Ružomberok | |||
| q3l1 | Slovan Liberec | 0-0 | Spartak | |||
| q3l1 | Shakhtar | 1-0 | Legia Warszawa | |||
| Tuesday, 22 August 2006 | ||||||
| q3l2 | Valencia | 3-0 | FC Salzburg | 3-1 | ||
| q3l2 | Benfica | 3-0 | FK Austria | 4-1 | ||
| q3l2 | Osasuna | 1-1 | Hamburger SV | 1-1 | ||
| q3l2 | Crvena Zvezda | 1-2 | Milan | 1-3 | ||
| q3l2 | Maccabi Haifa | 1-1 | Liverpool | 2-3 | ||
| Wednesday, 23 August 2006 | ||||||
| q3l2 | Arsenal | 2-1 | Dinamo Zagreb | 5-1 | ||
| q3l2 | Fenerbahçe | 2-2 | Dynamo | 3-5 | ||
| q3l2 | FCSB | 2-1 | Standard | 4-3 | ||
| q3l2 | Spartak | 2-1 | Slovan Liberec | 2-1 | ||
| q3l2 | Chievo | 2-2 | Levski | 2-4 | ||
| q3l2 | Legia Warszawa | 2-3 | Shakhtar | 2-4 | ||
| q3l2 | Ajax | 0-2 | FC København | 2-3 | ||
| q3l2 | AEK | 3-0 | Hearts | 5-1 | ||
| q3l2 | Mladá Boleslav | 1-1 | Galatasaray | 3-6 | ||
| q3l2 | Ružomberok | 0-2 | CSKA | 0-5 | ||
| q3l2 | Rabotnički | 0-1 | Lille | 0-4 | ||
