| ROUND | Q1 | Q2 | Q3 | Q4 | R1 | R2 | R3 | QF | SF | F | |||||||||||||
| l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | r1 | r2 | r3 | r4 | r5 | r6 | l1 | l2 | l1 | l2 | l1 | l2 | l1 | l2 | ||
| Season archive |
| Thursday, 14 July 2016 | ||||||
| q2l1 |  Hibernian | 0-1 | Brøndby | |||
| q2l1 | Aberdeen | 3-0 | JFK Ventspils | |||
| q2l1 |  KR | 3-3 | Grasshoppers | |||
| q2l1 |  Slovan Bratislava | 0-0 | Jelgava* | |||
| q2l1 |  AIK | 1-0 | Europa FC | |||
| q2l1 |  FK Austria | 1-0 | Kukësi | |||
| q2l1 |  MTK | 1-2 | Qabala | |||
| q2l1 | MOL Fehérvár | 2-0 | Čukarički | |||
| q2l1 | Partizan | 0-0 | Zagłębie Lubin | |||
| q2l1 | Debrecen | 1-2 | Torpedo Zhodino | |||
| q2l1 |  Maccabi Haifa | 1-1 | Nõmme Kalju | |||
| q2l1 | Dinamo Minsk | 1-1 | St. Patrick's | |||
| q2l1 | Beitar Jerusalem | 1-0 | Omonia | |||
| q2l1 |  Racing Genk | 2-0 | Budućnost | |||
| q2l1 | Vojvodina | 1-0 | Connah's Quay | |||
| q2l1 |  Maribor | 0-0 | Levski | |||
| q2l1 | Häcken | 1-1 | Cork City | |||
| q2l1 |  Zimbru | 2-2 | Ankaraspor | |||
| q2l1 |  Shirak | 1-1 | Spartak Trnava | |||
| q2l1 |  Cliftonville | 2-3 | AEK | |||
| q2l1 | Neftçi | 0-0 | Shkëndija | |||
| q2l1 |  Birkirkara | 0-0 | Hearts | |||
| q2l1 |  RoPS | 1-1 | Lokomotiva | |||
| q2l1 | FC Midtjylland | 3-0 | Vaduz | |||
| q2l1 | SønderjyskE | 2-1 | Strømsgodset | |||
| q2l1 | Beroe | 1-1 | HJK | |||
| q2l1 |  PAS Giannina | 3-0 | Odd | |||
| q2l1 | Levadia Tallinn | 3-1 | Slavia Praha | |||
| q2l1 | Shakhter | 1-1 | Domžale | |||
| q2l1 |  Politehnica Iași | 2-2 | Hajduk Split | |||
| q2l1 | Piast Gliwice | 0-3 | IFK Göteborg | |||
| q2l1 |  Kairat | 1-1 | Maccabi Tel Aviv | |||
| q2l1 | Admira | 1-0 | Kapaz | |||
| Wednesday, 20 July 2016 | ||||||
| q2l2 | Kapaz | 0-2 | Admira | 0-3 | ||
| Thursday, 21 July 2016 | ||||||
| q2l2 | Omonia | 3-2 | Beitar Jerusalem | 3-3 | ||
| q2l2 | Hearts | 1-2 | Birkirkara | 1-2 | ||
| q2l2 | IFK Göteborg | 0-0 | Piast Gliwice | 3-0 | ||
| q2l2 | Brøndby | 0-1 | Hibernian | 1-1, aet, p5-3 | ||
| q2l2 | Grasshoppers | 2-1 | KR | 5-4 | ||
| q2l2 | Levski | 1-1 | Maribor | 1-1 | ||
| q2l2 | HJK | 1-0 | Beroe | 2-1 | ||
| q2l2 | Slavia Praha | 2-0 | Levadia Tallinn | 3-3 | ||
| q2l2 | Hajduk Split | 2-1 | Politehnica Iași | 4-3 | ||
| q2l2 | Cork City | 1-0 | Häcken | 2-1 | ||
| q2l2 | Strømsgodset | 2-2 | SønderjyskE | 3-4, aet | ||
| q2l2 | Maccabi Tel Aviv | 2-1 | Kairat | 3-2 | ||
| q2l2 | Connah's Quay | 1-2 | Vojvodina | 1-3 | ||
| q2l2 | Spartak Trnava | 2-0 | Shirak | 3-1 | ||
| q2l2 | St. Patrick's | 0-1 | Dinamo Minsk | 1-2 | ||
| q2l2 | Zagłębie Lubin | 0-0 | Partizan | 0-0, aet, p4-3 | ||
| q2l2 | Odd | 3-1 | PAS Giannina | 3-4, aet | ||
| q2l2 | Čukarički | 1-1 | MOL Fehérvár | 1-3 | ||
| q2l2 | AEK | 2-0 | Cliftonville | 5-2 | ||
| q2l2 | JFK Ventspils | 0-1 | Aberdeen | 0-4 | ||
| q2l2 | Vaduz | 2-2 | FC Midtjylland | 2-5 | ||
| q2l2 | Domžale | 2-1 | Shakhter | 3-2 | ||
| q2l2 | Ankaraspor | 5-0 | Zimbru | 7-2 | ||
| q2l2 | Budućnost | 2-0 | Racing Genk | 2-2, aet, p2-4 | ||
| q2l2 | Torpedo Zhodino | 1-0 | Debrecen | 3-1 | ||
| q2l2 | Shkëndija | 1-0 | Neftçi | 1-0 | ||
| q2l2 | Lokomotiva | 3-0 | RoPS | 4-1 | ||
| q2l2 | Nõmme Kalju | 1-1 | Maccabi Haifa | 2-2, aet, p5-3 | ||
| q2l2 | Qabala | 2-0 | MTK | 4-1 | ||
| q2l2 | Jelgava* | 3-0 | Slovan Bratislava | 3-0 | ||
| q2l2 | Kukësi | 1-4 | FK Austria | 1-5 | ||
| q2l2 | Europa FC | 0-1 | AIK | 0-2 | ||
